LandmarkTransform

#include <vtkActor.h>
#include <vtkCellData.h>
#include <vtkGlyph3DMapper.h>
#include <vtkLandmarkTransform.h>
#include <vtkLine.h>
#include <vtkMatrix4x4.h>
#include <vtkNamedColors.h>
#include <vtkNew.h>
#include <vtkPoints.h>
#include <vtkPolyDataMapper.h>
#include <vtkProperty.h>
#include <vtkRenderWindow.h>
#include <vtkRenderWindowInteractor.h>
#include <vtkRenderer.h>
#include <vtkSmartPointer.h>
#include <vtkSphereSource.h>
#include <vtkTransformPolyDataFilter.h>
#include <vtkUnsignedCharArray.h>
#include <vtkVertexGlyphFilter.h>

// For compatibility with new VTK generic data arrays
#ifdef vtkGenericDataArray_h
#define InsertNextTupleValue InsertNextTypedTuple
#endif

namespace {
void AxesLines(vtkSmartPointer<vtkPolyData> linesPolyData);

/**
 * Convert points to glyphs.
 *
 * @param points - The points to glyph
 * @param scale - The scale, used to determine the size of the glyph
 * representing the point, expressed as a fraction of the largest side of the
 * bounding box surrounding the points. e.g. 0.05
 *
 * @return The actor.
 */
vtkSmartPointer<vtkActor> PointToGlyph(vtkPoints* points, double const& scale);

} // namespace

int main(int, char*[])
{
  /*
  This demo creates a coordinate frame (+x, +y, +z) of vectors and a rotated,
  peturbed frame (+z, +y, -x) and aligns the rotated frame to the original as
  best as possible.
  */

  vtkNew<vtkNamedColors> colors;

  // An aid to orient the view of the created data.
  vtkNew<vtkPolyData> linesPolyData;
  AxesLines(linesPolyData);

  vtkNew<vtkPoints> sourcePoints;
  double sourcePoint1[3] = {1.0, 0.0, 0.0};
  sourcePoints->InsertNextPoint(sourcePoint1);
  double sourcePoint2[3] = {0.0, 1.0, 0.0};
  sourcePoints->InsertNextPoint(sourcePoint2);
  double sourcePoint3[3] = {0.0, 0.0, 1.0};
  sourcePoints->InsertNextPoint(sourcePoint3);

  vtkNew<vtkPoints> targetPoints;
  double targetPoint1[3] = {0.0, 0.0, 1.1};
  targetPoints->InsertNextPoint(targetPoint1);
  double targetPoint2[3] = {0.0, 1.02, 0.0};
  targetPoints->InsertNextPoint(targetPoint2);
  double targetPoint3[3] = {-1.11, 0.0, 0.0};
  targetPoints->InsertNextPoint(targetPoint3);

  // Setup the transform
  vtkNew<vtkLandmarkTransform> landmarkTransform;
  landmarkTransform->SetSourceLandmarks(sourcePoints);
  landmarkTransform->SetTargetLandmarks(targetPoints);
  landmarkTransform->SetModeToRigidBody();
  landmarkTransform->Update(); // should this be here?

  vtkNew<vtkPolyData> source;
  source->SetPoints(sourcePoints);

  vtkNew<vtkPolyData> target;
  target->SetPoints(targetPoints);

  vtkNew<vtkVertexGlyphFilter> sourceGlyphFilter;
  sourceGlyphFilter->SetInputData(source);
  sourceGlyphFilter->Update();

  vtkNew<vtkVertexGlyphFilter> targetGlyphFilter;
  targetGlyphFilter->SetInputData(target);
  targetGlyphFilter->Update();

  vtkNew<vtkTransformPolyDataFilter> transformFilter;
  transformFilter->SetInputConnection(sourceGlyphFilter->GetOutputPort());
  transformFilter->SetTransform(landmarkTransform);
  transformFilter->Update();

  // Display the transformation matrix that was computed
  vtkMatrix4x4* mat = landmarkTransform->GetMatrix();
  std::cout << "Matrix: " << *mat << std::endl;

  // Visualize
  // Map the points to spheres
  auto sourceActor =
      PointToGlyph(sourceGlyphFilter->GetOutput()->GetPoints(), 0.03);
  sourceActor->GetProperty()->SetColor(colors->GetColor3d("Red").GetData());

  auto targetActor =
      PointToGlyph(targetGlyphFilter->GetOutput()->GetPoints(), 0.03);
  targetActor->GetProperty()->SetColor(colors->GetColor3d("Lime").GetData());

  auto solutionActor =
      PointToGlyph(transformFilter->GetOutput()->GetPoints(), 0.03);
  solutionActor->GetProperty()->SetColor(colors->GetColor3d("Blue").GetData());

  vtkNew<vtkPolyDataMapper> axesMapper;
  axesMapper->SetInputData(linesPolyData);

  vtkNew<vtkActor> axesActor;
  axesActor->SetMapper(axesMapper);
  axesActor->GetProperty()->SetLineWidth(1);

  // Create a renderer, render window, and interactor
  vtkNew<vtkRenderer> renderer;
  vtkNew<vtkRenderWindow> renderWindow;
  renderWindow->AddRenderer(renderer);
  vtkNew<vtkRenderWindowInteractor> renderWindowInteractor;
  renderWindowInteractor->SetRenderWindow(renderWindow);
  renderWindow->SetWindowName("LandmarkTransform");

  // Add the actor to the scene
  renderer->AddActor(sourceActor);
  renderer->AddActor(targetActor);
  renderer->AddActor(solutionActor);
  renderer->AddActor(axesActor);

  renderer->SetBackground(colors->GetColor3d("SlateGray").GetData());

  // Render and interact
  renderWindow->Render();
  renderWindowInteractor->Start();

  return EXIT_SUCCESS;
}

namespace {
void AxesLines(vtkSmartPointer<vtkPolyData> linesPolyData)
{
  // Create four points
  double origin[3] = {0.0, 0.0, 0.0};
  double p0[3] = {1.2, 0.0, 0.0};
  double p1[3] = {0.0, 1.2, 0.0};
  double p2[3] = {0.0, 0.0, 1.2};

  // Create a vtkPoints container and store the points in it
  vtkNew<vtkPoints> pts;
  pts->InsertNextPoint(origin);
  pts->InsertNextPoint(p0);
  pts->InsertNextPoint(p1);
  pts->InsertNextPoint(p2);

  // Add the points to the polydata container
  linesPolyData->SetPoints(pts);

  // Create the lines (between Origin and p0, ,p1, p2)
  vtkNew<vtkLine> line0;
  line0->GetPointIds()->SetId(0, 0);
  line0->GetPointIds()->SetId(1, 1);
  vtkNew<vtkLine> line1;
  line1->GetPointIds()->SetId(0, 0);
  line1->GetPointIds()->SetId(1, 2);
  vtkNew<vtkLine> line2;
  line2->GetPointIds()->SetId(0, 0);
  line2->GetPointIds()->SetId(1, 3);

  // Create a vtkCellArray container and store the lines in it
  vtkNew<vtkCellArray> lines;
  lines->InsertNextCell(line0);
  lines->InsertNextCell(line1);
  lines->InsertNextCell(line2);

  // Add the lines to the polydata container
  linesPolyData->SetLines(lines);

  vtkNew<vtkNamedColors> namedColors;

  // Create a vtkUnsignedCharArray container and store the colors in it
  vtkNew<vtkUnsignedCharArray> colors;
  colors->SetNumberOfComponents(3);
  colors->InsertNextTupleValue(namedColors->GetColor3ub("DarkRed").GetData());
  colors->InsertNextTupleValue(namedColors->GetColor3ub("DarkGreen").GetData());
  colors->InsertNextTupleValue(
      namedColors->GetColor3ub("MidnightBlue").GetData());

  // Color the lines.
  linesPolyData->GetCellData()->SetScalars(colors);
}

vtkSmartPointer<vtkActor> PointToGlyph(vtkPoints* points, double const& scale)
{
  auto bounds = points->GetBounds();
  double maxLen = 0;
  for (int i = 1; i < 3; ++i)
  {
    maxLen = std::max(bounds[i + 1] - bounds[i], maxLen);
  }

  vtkNew<vtkSphereSource> sphereSource;
  sphereSource->SetRadius(scale * maxLen);

  vtkNew<vtkPolyData> pd;
  pd->SetPoints(points);

  vtkNew<vtkGlyph3DMapper> mapper;
  mapper->SetInputData(pd);
  mapper->SetSourceConnection(sphereSource->GetOutputPort());
  mapper->ScalarVisibilityOff();
  mapper->ScalingOff();

  vtkNew<vtkActor> actor;
  actor->SetMapper(mapper);

  return actor;
}

} // namespace

cmake_minimum_required(VERSION 3.12 FATAL_ERROR)

project(LandmarkTransform)

find_package(VTK COMPONENTS 
)

if (NOT VTK_FOUND)
  message(FATAL_ERROR "LandmarkTransform: Unable to find the VTK build folder.")
endif()

# Prevent a "command line is too long" failure in Windows.
set(CMAKE_NINJA_FORCE_RESPONSE_FILE "ON" CACHE BOOL "Force Ninja to use response files.")
add_executable(LandmarkTransform MACOSX_BUNDLE LandmarkTransform.cxx )
  target_link_libraries(LandmarkTransform PRIVATE ${VTK_LIBRARIES}
)
# vtk_module_autoinit is needed
vtk_module_autoinit(
  TARGETS LandmarkTransform
  MODULES ${VTK_LIBRARIES}
)

cd LandmarkTransform/build

cmake ..

cmake -DVTK_DIR:PATH=/home/me/vtk_build ..

make

./LandmarkTransform